These cottage cheese protein bagels are a game-changer for anyone looking for a high-protein, easy-to-make breakfast or snack. Made with just three simple ingredients, they offer a soft and chewy texture with a slightly tangy flavor from the cottage cheese. Whether baked or air-fried, they turn golden brown and deliciously crisp on the outside while remaining tender inside.

Unlike traditional bagels, which require yeast and long proofing times, this recipe comes together in under 35 minutes. The addition of cottage cheese boosts the protein content, making these bagels a nutritious option for those looking to maintain energy levels throughout the day.
These bagels are perfect for:
- A quick and healthy breakfast
- A high-protein post-workout snack
- A delicious sandwich base
- A meal prep option for busy mornings
With endless topping possibilities, these bagels can be customized to suit any taste preference, from savory everything bagel seasoning to a sprinkle of shredded cheese.
Preparation Phase & Tools to Use
Before getting started, having the right tools on hand will make the process smooth and efficient.
Essential Tools and Equipment
- Food processor or blender – To blend the cottage cheese into a smooth consistency.
- Mixing bowl – For combining the ingredients and forming the dough.
- Baking sheet with parchment paper – If using an oven.
- Air fryer (optional) – For a quicker cooking method with a crispier texture.
- Pastry brush – For applying the egg wash to create a golden crust.
- Measuring cups – For accurate ingredient portions.
- Floured work surface – To knead and shape the bagels without sticking.
Preparation Tips
- Use full-fat cottage cheese for the best texture and richness.
- Blend the cottage cheese thoroughly to ensure a smooth, uniform dough.
- Flour your hands and work surface generously to prevent sticking.
- If the dough feels too sticky, add small amounts of flour while kneading.
- Press the ends of each bagel firmly together to maintain shape while baking.
Ingredients
For the Bagel Dough:
- 1 cup self-rising flour (see Notes for gluten-free or substitution options)
- 1 cup full-fat cottage cheese (blended until smooth)
For Assembly:
- 1 large egg, beaten (for egg wash)
- Toppings of choice: Sesame seeds, everything bagel seasoning, shredded Asiago cheese, or poppy seeds
Step-by-Step Directions
1. Preheat the Oven or Air Fryer
- Oven method: Preheat to 375°F (190°C) and position the rack to the top position. Line a baking sheet with parchment paper.
- Air fryer method: Preheat to 350°F (175°C) for 5 minutes.
2. Blend the Cottage Cheese
- Add the cottage cheese to a food processor or blender.
- Blend on high until completely smooth, stopping occasionally to scrape down the sides.
3. Make the Dough
- Transfer the blended cottage cheese to a mixing bowl.
- Add the self-rising flour and stir until combined. The dough should pull away from the sides of the bowl.
- Lightly flour a work surface and transfer the dough onto it.
- Knead the dough 8–10 times until smooth, adding extra flour as needed to prevent sticking.
4. Shape the Bagels
- Divide the dough into four equal portions (each should weigh about 80g for accuracy).
- Roll each portion into a 6–7 inch rope, about 1 inch thick.
- Connect the ends of each rope to form a circular bagel shape, pinching firmly to seal.
- Place the shaped bagels onto the prepared baking sheet or air fryer basket.
5. Add Toppings
- Use a pastry brush to coat the tops of the bagels with the beaten egg.
- Sprinkle with your desired toppings for extra flavor.
6. Bake or Air Fry
- Oven Method: Bake for 25–30 minutes, until the bagels are puffed and golden brown.
- Air Fryer Method: Spray the basket with nonstick spray and air fry at 350°F for 10–12 minutes, until golden brown.
7. Cool and Serve
- Let the bagels cool for at least 15 minutes before slicing.
- Enjoy plain or with your favorite spreads like cream cheese, avocado, or nut butter.

Notes & Substitutions
Flour Substitutions:
- Gluten-Free Option: Use 1 cup of a gluten-free flour blend with xanthan gum (such as King Arthur’s) mixed with 3 teaspoons baking powder and ½ teaspoon kosher salt.
- No Self-Rising Flour? Use 1 cup all-purpose flour combined with 3 teaspoons baking powder and ½ teaspoon kosher salt.
Cottage Cheese Alternatives:
- Full-fat cottage cheese is recommended for the best results, but plain Greek yogurt can be used as a substitute.
Storage Tips:
- Store in an airtight container at room temperature for up to 4 days.
- For longer storage, freeze in a sealed bag for up to 1 month.
How to Serve Cottage Cheese Protein Bagels
These cottage cheese protein bagels are incredibly versatile and can be enjoyed in multiple ways. Whether you prefer a simple spread or a more elaborate meal, here are some of the best ways to serve them:
1. Classic Cream Cheese Spread
A traditional pairing that enhances the soft, chewy texture of the bagels. Try using:
- Plain cream cheese
- Chive and onion cream cheese
- Whipped feta for a tangy twist
2. Protein-Packed Breakfast Sandwich
Slice the bagel and add:
- Scrambled or fried eggs
- Turkey bacon or smoked salmon
- Sliced avocado for healthy fats
3. Sweet and Savory Options
For a sweet option, spread peanut butter or almond butter and top with banana slices or honey. For a more savory taste, try hummus with roasted vegetables.
4. Mini Pizzas
Slice the bagels in half, add tomato sauce, shredded mozzarella, and your favorite toppings. Bake at 375°F for 10 minutes until the cheese is melted.
5. Open-Faced Sandwich
Top a toasted bagel with cottage cheese, smoked salmon, and capers for a fresh and flavorful snack.
6. Meal Prep and On-the-Go Snacks
Pack these bagels for a quick, high-protein snack that can be enjoyed anywhere. Pair with a hard-boiled egg or Greek yogurt for a balanced meal.

Common Mistakes to Avoid & How to Perfect the Recipe
Even with a simple recipe, small mistakes can affect the final result. Here’s what to watch out for:
1. Using Cold Cottage Cheese
Cold cottage cheese makes the dough harder to mix. Let it come to room temperature before blending for a smoother consistency.
2. Not Blending the Cottage Cheese Enough
If the cottage cheese isn’t blended until smooth, the dough may be lumpy and difficult to knead. Blend until creamy for the best texture.
3. Over-Kneading the Dough
Kneading too much can make the bagels dense instead of soft and chewy. Knead just until the dough is smooth.
4. Not Flour-Dusting the Work Surface
The dough can be sticky, so lightly flour your hands and work surface to make shaping easier.
5. Forgetting to Seal the Ends
If the ends of the dough ropes aren’t pinched together properly, the bagels may come apart while baking. Press the ends firmly together.
6. Skipping the Egg Wash
The egg wash helps create a golden-brown crust. Without it, the bagels may look pale and unappealing.
7. Over-Baking or Under-Baking
Check for a golden-brown exterior and slightly firm texture. If they feel too soft, bake for a few more minutes. If using an air fryer, adjust time based on your model.
Best Side Dishes to Serve with Cottage Cheese Bagels
Pairing these high-protein bagels with the right sides can turn them into a well-balanced meal. Here are eight great options:
1. Greek Yogurt & Berries
A bowl of Greek yogurt with fresh berries complements the bagels’ protein content while adding natural sweetness and antioxidants.
2. Scrambled or Poached Eggs
Eggs are a great way to add more protein and healthy fats. Serve on the side or inside the bagel as a sandwich.
3. Avocado & Tomato Salad
A fresh avocado and tomato salad with olive oil and lemon juice pairs well with the bagels, adding a creamy and tangy contrast.
4. Smoked Salmon & Capers
For a gourmet touch, serve the bagels with smoked salmon, capers, and a squeeze of lemon. This combination enhances the bagels’ savory profile.
5. Cottage Cheese & Honey
For an extra protein boost, serve a side of cottage cheese with a drizzle of honey and crushed walnuts. This is a great sweet and savory balance.
6. Roasted Vegetables
If you’re enjoying the bagels as a lunch or dinner option, pair them with roasted vegetables like bell peppers, zucchini, or asparagus.
7. Nut Butter & Banana Slices
For a sweet and satisfying option, top the bagels with almond or peanut butter and banana slices. This is great for a pre- or post-workout meal.
8. Soup or Salad
Pairing a warm soup, such as tomato basil or butternut squash, with a toasted bagel can create a cozy meal. A light salad with balsamic dressing also makes for a refreshing contrast.
Expert Tips for the Best Cottage Cheese Protein Bagels
1. Use Full-Fat Cottage Cheese for the Best Texture
Full-fat cottage cheese provides a richer, creamier consistency. If using low-fat or fat-free varieties, the dough may be drier, so adjust with a little extra moisture if needed.
2. Blend the Cottage Cheese Until Completely Smooth
Unblended cottage cheese can create lumps in the dough. Use a blender or food processor to achieve a creamy texture, which helps the dough mix evenly.
3. Adjust Flour as Needed
Depending on the moisture content of your cottage cheese, the dough may be slightly sticky. Add a small amount of flour while kneading to prevent sticking, but avoid over-flouring, as it can make the bagels dense.
4. Let the Bagels Cool Before Slicing
Freshly baked bagels will continue to firm up as they cool. Cutting them too soon may cause them to crumble. Let them rest for at least 15 minutes for the best texture.
5. Customize with Different Toppings and Add-ins
Try different toppings like:
- Sesame seeds or everything bagel seasoning for a classic flavor
- Poppy seeds or chia seeds for extra texture
- Shredded cheese for a savory twist
- Cinnamon and a light sprinkle of sugar for a sweet variation
Storage and Reheating Instructions
How to Store Cottage Cheese Bagels
- Room Temperature: Store in an airtight container for up to 4 days. Keep them in a cool, dry place.
- Refrigeration: While not necessary, refrigerating them can extend freshness for up to 7 days. Store in a sealed bag or container.
- Freezing: Wrap each bagel individually in plastic wrap and place them in a freezer-safe bag. Freeze for up to 1 month.
How to Reheat Bagels
- Oven: Preheat to 350°F and warm for 5–7 minutes until heated through.
- Toaster Oven: Toast on medium until warm and slightly crispy.
- Microwave: Heat for 15–20 seconds, though this may soften the exterior.
- Air Fryer: Set to 350°F and heat for 3–5 minutes for a crispy outside.
For frozen bagels, let them thaw at room temperature for about 30 minutes before reheating.

Frequently Asked Questions (FAQs)
1. Can I make these bagels gluten-free?
Yes, use 1 cup of a gluten-free flour blend with xanthan gum and mix it with 3 teaspoons baking powder and ½ teaspoon salt to replace self-rising flour. This ensures the dough rises properly.
2. Can I make these without a food processor?
Yes, but the texture may not be as smooth. You can use a fork to mash the cottage cheese as much as possible, or strain it through a fine-mesh sieve before mixing with the flour.
3. Can I use Greek yogurt instead of cottage cheese?
Yes, plain Greek yogurt can be used as a substitute in equal amounts. The texture may be slightly denser, but it will still work well.
4. Why is my dough too sticky to handle?
If the dough is too sticky, add small amounts of flour while kneading until it becomes manageable. Be careful not to add too much, as it can make the bagels dry and dense.
5. Can I make these bagels in advance?
Yes, you can prepare and shape the bagels, then store them in the refrigerator for up to 24 hours before baking. This allows for a quick and easy bake the next day.
6. How do I make them crispier?
For crispier bagels, bake them for an extra 5 minutes or toast them before serving. If using an air fryer, increase the time by 2–3 minutes.
7. Can I add sweet flavors instead of savory?
Yes, mix in a teaspoon of cinnamon and a tablespoon of honey to the dough for a sweet version. Top with a sprinkle of cinnamon sugar before baking.
8. What spreads pair best with these bagels?
- Classic cream cheese
- Almond or peanut butter
- Mashed avocado with a sprinkle of sea salt
- Hummus for a savory option
- Cottage cheese with honey for extra protein
9. Can I double the recipe?
Yes, simply double all ingredients while maintaining the same baking times. Be sure to work in batches if using an air fryer.
10. Why didn’t my bagels rise properly?
This may be due to:
- Using expired baking powder (if substituting self-rising flour)
- Not blending the cottage cheese fully
- Over-kneading the dough, which can make it dense
Final Thoughts
These cottage cheese protein bagels are an easy, high-protein alternative to traditional bagels, requiring just three ingredients and minimal effort. Whether enjoyed fresh, toasted, or frozen for later, they make for a nutritious and satisfying meal.
With so many customization options, from sweet to savory, these bagels can fit any preference. Try them with different toppings, spreads, or as a sandwich base for a versatile and delicious addition to your meal plan.
Cottage Cheese Protein Bagels
Ingredients
For the Bagel Dough:
- 1 cup self-rising flour see Notes for gluten-free or substitution options
- 1 cup full-fat cottage cheese see Notes for alternatives
For Assembly:
- 1 large egg beaten (for egg wash)
- Toppings of choice: sesame seeds everything bagel seasoning, shredded Asiago cheese, or poppy seeds
Instructions
Preheat Oven or Air Fryer
- Oven: Preheat to 375°F and position the rack to the top position. Line a large baking sheet with parchment paper.
- Air Fryer: Preheat to 350°F for 5 minutes.
Blend Cottage Cheese
- Place the cottage cheese in a food processor or blender. Blend on high until smooth, stopping to scrape down the sides as needed.
Make the Dough
- Transfer the blended cottage cheese to a medium bowl. Add the self-rising flour and mix until fully combined. The dough should start pulling away from the sides of the bowl.
- Transfer the dough to a generously floured work surface. Knead it 8–10 times until smooth, adding more flour as needed to prevent sticking.
Shape the Bagels
- Roll the dough into a ball and divide it into 4 equal pieces (about 80g each for precision).
- Roll each piece into a 6–7 inch rope, about 1 inch thick. Form each rope into a circle, pinching the ends together tightly to seal.
- Place the bagels on the prepared baking sheet (or air fryer basket if air-frying).
Add Toppings
- Brush the tops of the bagels with the beaten egg. Sprinkle generously with your desired toppings.
Bake or Air Fry
- Oven Method: Bake for 25–30 minutes, or until puffed and golden brown.
- Air Fryer Method: Spray the air fryer basket with nonstick spray and air fry for 10–12 minutes, or until golden brown.
Cool and Serve
- Allow the bagels to cool for 15 minutes before slicing and serving.
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